J3_7NRC_014
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7NRC|1|LA|A|2703, 7NRC|1|LA|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_014 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1216
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRC|1|LA|C|2664
7NRC|1|LA|U|2665
7NRC|1|LA|C|2666
*
7NRC|1|LA|G|2690
7NRC|1|LA|A|2691
7NRC|1|LA|A|2692
*
7NRC|1|LA|U|2701
7NRC|1|LA|A|2702
7NRC|1|LA|A|2703
7NRC|1|LA|A|2704
7NRC|1|LA|A|2705
7NRC|1|LA|G|2706
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- 60S ribosomal protein L11-B
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lq
- 60S ribosomal protein L42-A
- Chain Sn
- Transfer RNA; tRNA
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