3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_018 not in the Motif Atlas
Homologous match to J3_8P9A_068
Geometric discrepancy: 0.0849
The information below is about J3_8P9A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7NRC|1|S2|A|41
7NRC|1|S2|G|42
*
7NRC|1|S2|C|433
7NRC|1|S2|G|434
7NRC|1|S2|C|435
7NRC|1|S2|A|436
7NRC|1|S2|A|437
7NRC|1|S2|A|438
7NRC|1|S2|U|439
*
7NRC|1|S2|A|464
7NRC|1|S2|G|465
7NRC|1|S2|U|466

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SW
40S ribosomal protein S9-A
Chain Sc
40S ribosomal protein S23-A
Chain So
Ribosome-interacting GTPase 2

Coloring options:


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