J3_7NRC_018
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_018 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.0849
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NRC|1|S2|A|41
7NRC|1|S2|G|42
*
7NRC|1|S2|C|433
7NRC|1|S2|G|434
7NRC|1|S2|C|435
7NRC|1|S2|A|436
7NRC|1|S2|A|437
7NRC|1|S2|A|438
7NRC|1|S2|U|439
*
7NRC|1|S2|A|464
7NRC|1|S2|G|465
7NRC|1|S2|U|466
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain So
- Ribosome-interacting GTPase 2
Coloring options: