3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
7NRC|1|S2|A|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_022 not in the Motif Atlas
Homologous match to J3_4V88_034
Geometric discrepancy: 0.2504
The information below is about J3_4V88_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_23622.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|S2|C|1037
7NRC|1|S2|U|1038
7NRC|1|S2|A|1039
*
7NRC|1|S2|U|1079
7NRC|1|S2|U|1080
7NRC|1|S2|A|1081
7NRC|1|S2|C|1082
7NRC|1|S2|G|1083
*
7NRC|1|S2|C|1090
7NRC|1|S2|A|1091
7NRC|1|S2|A|1092
7NRC|1|S2|A|1093
7NRC|1|S2|G|1094

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SP
40S ribosomal protein S0-A
Chain SR
40S ribosomal protein S2
Chain Sa
40S ribosomal protein S21-A
Chain Sb
40S ribosomal protein S22-A
Chain Se
40S ribosomal protein S26-B
Chain Sf
40S ribosomal protein S27-A

Coloring options:


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