J3_7NRC_027
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_027 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1495
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NRC|1|S2|U|1283
7NRC|1|S2|C|1284
7NRC|1|S2|U|1285
7NRC|1|S2|U|1286
7NRC|1|S2|A|1287
7NRC|1|S2|G|1288
*
7NRC|1|S2|C|1327
7NRC|1|S2|G|1328
7NRC|1|S2|A|1329
7NRC|1|S2|G|1330
7NRC|1|S2|A|1331
7NRC|1|S2|C|1332
*
7NRC|1|S2|G|1419
7NRC|1|S2|C|1420
7NRC|1|S2|A|1421
7NRC|1|S2|A|1422
7NRC|1|S2|U|1423
7NRC|1|S2|A|1424
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SR
- 40S ribosomal protein S2
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