3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_028 not in the Motif Atlas
Homologous match to J3_8P9A_081
Geometric discrepancy: 0.1445
The information below is about J3_8P9A_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7NRC|1|S2|U|1293
7NRC|1|S2|G|1294
*
7NRC|1|S2|U|1303
7NRC|1|S2|G|1304
7NRC|1|S2|U|1305
7NRC|1|S2|C|1306
*
7NRC|1|S2|G|1318
7NRC|1|S2|A|1319
7NRC|1|S2|U|1320
7NRC|1|S2|A|1321
7NRC|1|S2|A|1322

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SG
40S ribosomal protein S17-B
Chain SP
40S ribosomal protein S0-A
Chain SR
40S ribosomal protein S2

Coloring options:


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