3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
7NRC|1|LA|U|343, 7NRC|1|LA|A|351, 7NRC|1|LC|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_033 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0619
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7NRC|1|LA|C|340
7NRC|1|LA|G|341
7NRC|1|LA|A|342
7NRC|1|LA|U|343
7NRC|1|LA|A|344
7NRC|1|LA|G|345
7NRC|1|LA|C|346
7NRC|1|LA|G|347
7NRC|1|LA|A|348
7NRC|1|LA|A|349
7NRC|1|LA|C|350
7NRC|1|LA|A|351
7NRC|1|LA|A|352
7NRC|1|LA|G|353
7NRC|1|LA|U|354
7NRC|1|LA|A|355
7NRC|1|LA|C|356
*
7NRC|1|LA|G|363
7NRC|1|LA|G|364
7NRC|1|LA|A|365
7NRC|1|LA|A|366
7NRC|1|LA|A|367
7NRC|1|LA|G|368
*
7NRC|1|LC|C|21
7NRC|1|LC|U|22
7NRC|1|LC|U|23
7NRC|1|LC|G|24

Current chains

Chain LA
25S rRNA (3184-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain La
60S ribosomal protein L26-A
Chain Ll
60S ribosomal protein L37-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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