J3_7NRC_033

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

7NRC|1|LA|U|343, 7NRC|1|LA|A|351, 7NRC|1|LC|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRC_033 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0619

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|C|340
7NRC|1|LA|G|341
7NRC|1|LA|A|342
7NRC|1|LA|U|343
7NRC|1|LA|A|344
7NRC|1|LA|G|345
7NRC|1|LA|C|346
7NRC|1|LA|G|347
7NRC|1|LA|A|348
7NRC|1|LA|A|349
7NRC|1|LA|C|350
7NRC|1|LA|A|351
7NRC|1|LA|A|352
7NRC|1|LA|G|353
7NRC|1|LA|U|354
7NRC|1|LA|A|355
7NRC|1|LA|C|356
*
7NRC|1|LA|G|363
7NRC|1|LA|G|364
7NRC|1|LA|A|365
7NRC|1|LA|A|366
7NRC|1|LA|A|367
7NRC|1|LA|G|368
*
7NRC|1|LC|C|21
7NRC|1|LC|U|22
7NRC|1|LC|U|23
7NRC|1|LC|G|24

Current chains

Chain LA

25S rRNA (3184-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A

Chain Ll

60S ribosomal protein L37-A

Chain Ln

60S ribosomal protein L39