J3_7NRC_033
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7NRC|1|LA|U|343, 7NRC|1|LA|A|351, 7NRC|1|LC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0619
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7NRC|1|LA|C|340
7NRC|1|LA|G|341
7NRC|1|LA|A|342
7NRC|1|LA|U|343
7NRC|1|LA|A|344
7NRC|1|LA|G|345
7NRC|1|LA|C|346
7NRC|1|LA|G|347
7NRC|1|LA|A|348
7NRC|1|LA|A|349
7NRC|1|LA|C|350
7NRC|1|LA|A|351
7NRC|1|LA|A|352
7NRC|1|LA|G|353
7NRC|1|LA|U|354
7NRC|1|LA|A|355
7NRC|1|LA|C|356
*
7NRC|1|LA|G|363
7NRC|1|LA|G|364
7NRC|1|LA|A|365
7NRC|1|LA|A|366
7NRC|1|LA|A|367
7NRC|1|LA|G|368
*
7NRC|1|LC|C|21
7NRC|1|LC|U|22
7NRC|1|LC|U|23
7NRC|1|LC|G|24
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: