3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
7NRC|1|LA|A|398, 7NRC|1|LA|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_034 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.0857
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7NRC|1|LA|A|369
7NRC|1|LA|U|370
7NRC|1|LA|G|371
7NRC|1|LA|A|372
7NRC|1|LA|A|373
7NRC|1|LA|A|374
7NRC|1|LA|A|375
7NRC|1|LA|G|376
7NRC|1|LA|A|377
7NRC|1|LA|A|378
7NRC|1|LA|C|379
*
7NRC|1|LA|G|390
7NRC|1|LA|A|391
7NRC|1|LA|G|392
7NRC|1|LA|U|393
7NRC|1|LA|G|394
7NRC|1|LA|A|395
7NRC|1|LA|A|396
7NRC|1|LA|A|397
7NRC|1|LA|A|398
7NRC|1|LA|A|399
7NRC|1|LA|G|400
7NRC|1|LA|U|401
7NRC|1|LA|A|402
7NRC|1|LA|C|403
7NRC|1|LA|G|404
*
7NRC|1|LC|C|19
7NRC|1|LC|U|20

Current chains

Chain LA
25S rRNA (3184-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LF
60S ribosomal protein L4-A
Chain LR
60S ribosomal protein L17-A
Chain La
60S ribosomal protein L26-A
Chain Ln
60S ribosomal protein L39

Coloring options:


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