J3_7NRC_036

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRC_036 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0855

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7NRC|1|LA|A|1654
7NRC|1|LA|G|1655
7NRC|1|LA|A|1656
7NRC|1|LA|C|1657
7NRC|1|LA|G|1658
*
7NRC|1|LA|C|1791
7NRC|1|LA|C|1792
*
7NRC|1|LA|G|1796
7NRC|1|LA|A|1797
7NRC|1|LA|A|1798
7NRC|1|LA|A|1799
7NRC|1|LA|A|1800
7NRC|1|LA|U|1801

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Li

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L43-A