3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
7NRC|1|S2|U|1413, 7NRC|1|S2|U|1414
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_042 not in the Motif Atlas
Homologous match to J3_8C3A_086
Geometric discrepancy: 0.1356
The information below is about J3_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_80847.1
Basepair signature
cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7NRC|1|S2|A|1336
7NRC|1|S2|A|1337
7NRC|1|S2|C|1338
*
7NRC|1|S2|G|1386
7NRC|1|S2|G|1387
7NRC|1|S2|A|1388
7NRC|1|S2|C|1389
7NRC|1|S2|U|1390
7NRC|1|S2|A|1391
*
7NRC|1|S2|U|1407
7NRC|1|S2|G|1408
7NRC|1|S2|G|1409
7NRC|1|S2|A|1410
7NRC|1|S2|A|1411
7NRC|1|S2|G|1412
7NRC|1|S2|U|1413
7NRC|1|S2|U|1414
7NRC|1|S2|U|1415

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SB
40S ribosomal protein S5
Chain SF
40S ribosomal protein S16-A
Chain SG
40S ribosomal protein S17-B
Chain SJ
40S ribosomal protein S20
Chain SM
40S ribosomal protein S29-A
Chain SO
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1258 s