J3_7NRD_016

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_016 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1591

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7NRD|1|LA|C|3298
7NRD|1|LA|A|3299
7NRD|1|LA|U|3300
*
7NRD|1|LA|A|3314
7NRD|1|LA|G|3315
7NRD|1|LA|A|3316
7NRD|1|LA|U|3317
7NRD|1|LA|G|3318
*
7NRD|1|LA|C|3388
7NRD|1|LA|U|3389
7NRD|1|LA|G|3390

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain Lf

60S ribosomal protein L31-A