J3_7NRD_021
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7NRD|1|S2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_021 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1544
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|S2|A|881
7NRD|1|S2|U|882
7NRD|1|S2|C|883
7NRD|1|S2|A|884
*
7NRD|1|S2|U|928
7NRD|1|S2|A|929
7NRD|1|S2|A|930
7NRD|1|S2|C|931
7NRD|1|S2|U|932
7NRD|1|S2|A|933
7NRD|1|S2|C|934
7NRD|1|S2|U|935
7NRD|1|S2|G|936
*
7NRD|1|S2|C|943
7NRD|1|S2|A|944
7NRD|1|S2|U|945
7NRD|1|S2|U|946
7NRD|1|S2|U|947
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain Lr
- 60S ribosomal protein L43-A
- Chain SQ
- 40S ribosomal protein S1-A
- Chain SY
- 40S ribosomal protein S13
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- 40S ribosomal protein S26-B
Coloring options: