J3_7NRD_041
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 7NRD|1|S2|A|217, 7NRD|1|S2|U|241
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|S2|A|213
7NRD|1|S2|G|214
7NRD|1|S2|A|215
7NRD|1|S2|U|216
7NRD|1|S2|A|217
7NRD|1|S2|A|218
7NRD|1|S2|A|219
7NRD|1|S2|A|220
7NRD|1|S2|A|221
7NRD|1|S2|A|222
7NRD|1|S2|U|223
7NRD|1|S2|C|224
7NRD|1|S2|A|225
7NRD|1|S2|A|226
7NRD|1|S2|U|227
7NRD|1|S2|G|228
*
7NRD|1|S2|C|237
7NRD|1|S2|U|238
7NRD|1|S2|C|239
7NRD|1|S2|U|240
7NRD|1|S2|U|241
7NRD|1|S2|U|242
7NRD|1|S2|G|243
*
7NRD|1|S2|C|250
7NRD|1|S2|A|251
7NRD|1|S2|U|252
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SX
- 40S ribosomal protein S11-A
Coloring options: