J3_7NRD_042
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7NRD|1|S2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_042 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1284
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|U|633
7NRD|1|S2|G|634
7NRD|1|S2|A|635
*
7NRD|1|S2|U|861
7NRD|1|S2|A|862
7NRD|1|S2|A|863
7NRD|1|S2|U|864
7NRD|1|S2|A|865
7NRD|1|S2|G|866
*
7NRD|1|S2|C|962
7NRD|1|S2|A|963
7NRD|1|S2|U|964
7NRD|1|S2|U|965
7NRD|1|S2|A|966
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SU
- 40S ribosomal protein S7-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sf
- 40S ribosomal protein S27-A
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