J3_7NSI_015

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

7NSI|1|AA|A|822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NSI_015 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4621

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7NSI|1|AA|C|542
7NSI|1|AA|A|543
7NSI|1|AA|C|544
7NSI|1|AA|C|545
*
7NSI|1|AA|G|788
7NSI|1|AA|C|789
7NSI|1|AA|A|790
7NSI|1|AA|G|791
7NSI|1|AA|U|792
7NSI|1|AA|A|793
7NSI|1|AA|A|794
*
7NSI|1|AA|U|816
7NSI|1|AA|G|817
7NSI|1|AA|A|818
7NSI|1|AA|A|819
7NSI|1|AA|U|820
7NSI|1|AA|A|821
7NSI|1|AA|A|822
7NSI|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AI

28S ribosomal protein S9, mitochondrial

Chain Am

Coiled-coil-helix-coiled-coil-helix domain containing 1