J3_7NWG_023

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGUC*GCCCAGCCCGUGGAC*GGUAG

Length

26 nucleotides

Bulged bases

7NWG|1|51|U|200, 7NWG|1|51|C|216, 7NWG|1|51|C|217, 7NWG|1|51|A|218, 7NWG|1|51|G|219, 7NWG|1|51|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|196
7NWG|1|51|A|197
7NWG|1|51|A|198
7NWG|1|51|G|199
7NWG|1|51|U|200
7NWG|1|51|C|201
*
7NWG|1|51|G|214
7NWG|1|51|C|215
7NWG|1|51|C|216
7NWG|1|51|C|217
7NWG|1|51|A|218
7NWG|1|51|G|219
7NWG|1|51|C|220
7NWG|1|51|C|221
7NWG|1|51|C|222
7NWG|1|51|G|223
7NWG|1|51|U|224
7NWG|1|51|G|225
7NWG|1|51|G|226
7NWG|1|51|A|227
7NWG|1|51|C|228
*
7NWG|1|51|G|240
7NWG|1|51|G|241
7NWG|1|51|U|242
7NWG|1|51|A|243
7NWG|1|51|G|244

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26