Loop J3_7NWG

3D structure

PDB id: 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: CGACCG*CGAGGGAGCGAGACCCGUGCGCCGCG*CACGGGGUCGG
Length: 43 nucleotides
Bulged bases: 7NWG|1|51|G|959, 7NWG|1|51|G|961, 7NWG|1|51|A|966, 7NWG|1|51|C|967, 7NWG|1|51|G|971|||A, 7NWG|1|51|C|972, 7NWG|1|51|C|1280, 7NWG|1|51|G|1287
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7NWG|1|51|C|709
7NWG|1|51|G|710
7NWG|1|51|A|711
7NWG|1|51|C|712
7NWG|1|51|C|713
7NWG|1|51|G|714
*
7NWG|1|51|C|954
7NWG|1|51|G|955
7NWG|1|51|A|956
7NWG|1|51|G|957
7NWG|1|51|G|958
7NWG|1|51|G|959
7NWG|1|51|A|960
7NWG|1|51|G|961
7NWG|1|51|C|962
7NWG|1|51|G|963
7NWG|1|51|A|964
7NWG|1|51|G|965
7NWG|1|51|A|966
7NWG|1|51|C|967
7NWG|1|51|C|968
7NWG|1|51|C|969
7NWG|1|51|G|970
7NWG|1|51|U|971
7NWG|1|51|G|971|||A
7NWG|1|51|C|972
7NWG|1|51|G|973
7NWG|1|51|C|974
7NWG|1|51|C|975
7NWG|1|51|G|976
7NWG|1|51|C|977
7NWG|1|51|G|978
*
7NWG|1|51|C|1278
7NWG|1|51|A|1279
7NWG|1|51|C|1280
7NWG|1|51|G|1281
7NWG|1|51|G|1282
7NWG|1|51|G|1283
7NWG|1|51|G|1284
7NWG|1|51|U|1285
7NWG|1|51|C|1286
7NWG|1|51|G|1287
7NWG|1|51|G|1288

Current chains

Chain 51: 28S Ribosomal RNA

Nearby chains

Chain C3: uL4
Chain E3: 60S ribosomal protein L6
Chain F3: uL30
Chain e3: eL32
Chain f3: eL33

J3_7NWG_025