J3_7NWG_028

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGGUGGC*GAAUCCGCUAAGGAGUG*CUCACC

Length

32 nucleotides

Bulged bases

7NWG|1|51|G|1972, 7NWG|1|51|G|1975, 7NWG|1|51|U|1992, 7NWG|1|51|C|1996, 7NWG|1|51|U|1997, 7NWG|1|51|A|1998, 7NWG|1|51|A|1999, 7NWG|1|51|G|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|1969
7NWG|1|51|A|1970
7NWG|1|51|U|1971
7NWG|1|51|G|1972
7NWG|1|51|G|1973
7NWG|1|51|U|1974
7NWG|1|51|G|1975
7NWG|1|51|G|1976
7NWG|1|51|C|1977
*
7NWG|1|51|G|1989
7NWG|1|51|A|1990
7NWG|1|51|A|1991
7NWG|1|51|U|1992
7NWG|1|51|C|1993
7NWG|1|51|C|1994
7NWG|1|51|G|1995
7NWG|1|51|C|1996
7NWG|1|51|U|1997
7NWG|1|51|A|1998
7NWG|1|51|A|1999
7NWG|1|51|G|2000
7NWG|1|51|G|2001
7NWG|1|51|A|2002
7NWG|1|51|G|2003
7NWG|1|51|U|2004
7NWG|1|51|G|2005
*
7NWG|1|51|C|2014
7NWG|1|51|U|2015
7NWG|1|51|C|2016
7NWG|1|51|A|2017
7NWG|1|51|C|2018
7NWG|1|51|C|2019

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain t3

60S acidic ribosomal protein P0

Chain u3

uL12