J3_7NWG_037

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGGUUGGC*GCCCUUCG*CGCACCGCACGUUCGUGG

Length

35 nucleotides

Bulged bases

7NWG|1|51|U|4882, 7NWG|1|51|A|4938, 7NWG|1|51|C|4940, 7NWG|1|51|A|4943, 7NWG|1|51|C|4944, 7NWG|1|51|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|U|4748
7NWG|1|51|C|4749
7NWG|1|51|G|4750
7NWG|1|51|G|4751
7NWG|1|51|U|4752
7NWG|1|51|U|4753
7NWG|1|51|G|4754
7NWG|1|51|G|4755
7NWG|1|51|C|4756
*
7NWG|1|51|G|4877
7NWG|1|51|C|4878
7NWG|1|51|C|4879
7NWG|1|51|C|4880
7NWG|1|51|U|4881
7NWG|1|51|U|4882
7NWG|1|51|C|4883
7NWG|1|51|G|4884
*
7NWG|1|51|C|4935
7NWG|1|51|G|4936
7NWG|1|51|C|4937
7NWG|1|51|A|4938
7NWG|1|51|C|4939
7NWG|1|51|C|4940
7NWG|1|51|G|4941
7NWG|1|51|C|4942
7NWG|1|51|A|4943
7NWG|1|51|C|4944
7NWG|1|51|G|4945
7NWG|1|51|U|4946
7NWG|1|51|U|4947
7NWG|1|51|C|4948
7NWG|1|51|G|4949
7NWG|1|51|U|4950
7NWG|1|51|G|4951
7NWG|1|51|G|4952

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

60S RIBOSOMAL PROTEIN UL13

Chain S3

60S ribosomal protein L18a

Chain f3

eL33