J3_7NWG_044

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCGGACACGGACAGGAUUG*CUCGAUUCCGUGGGUGGUG*CCUUAGAUGUC

Length

51 nucleotides

Bulged bases

7NWG|1|A2|G|1274, 7NWG|1|A2|G|1285, 7NWG|1|A2|U|1310, 7NWG|1|A2|U|1314, 7NWG|1|A2|C|1316, 7NWG|1|A2|U|1326, 7NWG|1|A2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|A2|G|1270
7NWG|1|A2|C|1271
7NWG|1|A2|C|1272
7NWG|1|A2|C|1273
7NWG|1|A2|G|1274
7NWG|1|A2|G|1275
7NWG|1|A2|A|1276
7NWG|1|A2|C|1277
7NWG|1|A2|A|1278
7NWG|1|A2|C|1279
7NWG|1|A2|G|1280
7NWG|1|A2|G|1281
7NWG|1|A2|A|1282
7NWG|1|A2|C|1283
7NWG|1|A2|A|1284
7NWG|1|A2|G|1285
7NWG|1|A2|G|1286
7NWG|1|A2|A|1287
7NWG|1|A2|U|1288
7NWG|1|A2|U|1289
7NWG|1|A2|G|1290
*
7NWG|1|A2|C|1309
7NWG|1|A2|U|1310
7NWG|1|A2|C|1311
7NWG|1|A2|G|1312
7NWG|1|A2|A|1313
7NWG|1|A2|U|1314
7NWG|1|A2|U|1315
7NWG|1|A2|C|1316
7NWG|1|A2|C|1317
7NWG|1|A2|G|1318
7NWG|1|A2|U|1319
7NWG|1|A2|G|1320
7NWG|1|A2|G|1321
7NWG|1|A2|G|1322
7NWG|1|A2|U|1323
7NWG|1|A2|G|1324
7NWG|1|A2|G|1325
7NWG|1|A2|U|1326
7NWG|1|A2|G|1327
*
7NWG|1|A2|C|1502
7NWG|1|A2|C|1503
7NWG|1|A2|U|1504
7NWG|1|A2|U|1505
7NWG|1|A2|A|1506
7NWG|1|A2|G|1507
7NWG|1|A2|A|1508
7NWG|1|A2|U|1509
7NWG|1|A2|G|1510
7NWG|1|A2|U|1511
7NWG|1|A2|C|1512

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain L2

40S ribosomal protein S10

Chain N2

40S ribosomal protein S12

Chain e2

uS14

Chain g2

eS31