J3_7NWG_048

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUU*AGAAG*CGUGGAAU

Length

18 nucleotides

Bulged bases

7NWG|1|51|G|1724, 7NWG|1|51|A|1805, 7NWG|1|51|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|A|1723
7NWG|1|51|G|1724
7NWG|1|51|U|1725
7NWG|1|51|U|1726
7NWG|1|51|U|1727
*
7NWG|1|51|A|1802
7NWG|1|51|G|1803
7NWG|1|51|A|1804
7NWG|1|51|A|1805
7NWG|1|51|G|1806
*
7NWG|1|51|C|1832
7NWG|1|51|G|1833
7NWG|1|51|U|1834
7NWG|1|51|G|1835
7NWG|1|51|G|1836
7NWG|1|51|A|1837
7NWG|1|51|A|1838
7NWG|1|51|U|1839

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21

Chain b3

eL29