J3_7NWG_049

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGUG*CAAGG*CCUCUG

Length

18 nucleotides

Bulged bases

7NWG|1|51|A|2396, 7NWG|1|51|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|2393
7NWG|1|51|G|2394
7NWG|1|51|A|2395
7NWG|1|51|A|2396
7NWG|1|51|G|2397
7NWG|1|51|U|2398
7NWG|1|51|G|2399
*
7NWG|1|51|C|2805
7NWG|1|51|A|2806
7NWG|1|51|A|2807
7NWG|1|51|G|2808
7NWG|1|51|G|2809
*
7NWG|1|51|C|2817
7NWG|1|51|C|2818
7NWG|1|51|U|2819
7NWG|1|51|C|2820
7NWG|1|51|U|2821
7NWG|1|51|G|2822

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain R3

60S ribosomal protein L19

Chain g3

60S ribosomal protein L34