J3_7NWG_051

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CUGACC*GGGACAG

Length

16 nucleotides

Bulged bases

7NWG|1|51|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_051 not in the Motif Atlas

Geometric match to J3_4WF9_007

Geometric discrepancy: 0.2283

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7NWG|1|51|C|3937
7NWG|1|51|G|3938
7NWG|1|51|G|3939
*
7NWG|1|51|C|4074
7NWG|1|51|U|4075
7NWG|1|51|G|4076
7NWG|1|51|A|4077
7NWG|1|51|C|4078
7NWG|1|51|C|4079
*
7NWG|1|51|G|4167
7NWG|1|51|G|4168
7NWG|1|51|G|4169
7NWG|1|51|A|4170
7NWG|1|51|C|4171
7NWG|1|51|A|4172
7NWG|1|51|G|4173

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A3

L8

Chain G3

L7a

Chain N3

Ribosomal protein L15