3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGUUCUUAGUUGG*CGAACGAGAC*GCAAUAACAG
Length
33 nucleotides
Bulged bases
7NWG|1|A2|U|1342, 7NWG|1|A2|A|1483, 7NWG|1|A2|A|1489
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWG|1|A2|C|1337
7NWG|1|A2|G|1338
7NWG|1|A2|U|1339
7NWG|1|A2|U|1340
7NWG|1|A2|C|1341
7NWG|1|A2|U|1342
7NWG|1|A2|U|1343
7NWG|1|A2|A|1344
7NWG|1|A2|G|1345
7NWG|1|A2|U|1346
7NWG|1|A2|U|1347
7NWG|1|A2|G|1348
7NWG|1|A2|G|1349
*
7NWG|1|A2|C|1380
7NWG|1|A2|G|1381
7NWG|1|A2|A|1382
7NWG|1|A2|A|1383
7NWG|1|A2|C|1384
7NWG|1|A2|G|1385
7NWG|1|A2|A|1386
7NWG|1|A2|G|1387
7NWG|1|A2|A|1388
7NWG|1|A2|C|1389
*
7NWG|1|A2|G|1481
7NWG|1|A2|C|1482
7NWG|1|A2|A|1483
7NWG|1|A2|A|1484
7NWG|1|A2|U|1485
7NWG|1|A2|A|1486
7NWG|1|A2|A|1487
7NWG|1|A2|C|1488
7NWG|1|A2|A|1489
7NWG|1|A2|G|1490

Current chains

Chain A2
18S Ribosomal RNA

Nearby chains

Chain B2
40S ribosomal protein SA
Chain D2
40S ribosomal protein S2
Chain E2
40S ribosomal protein S3
Chain R2
Ribosomal protein S16
Chain S2
40S ribosomal protein S17
Chain V2
40S ribosomal protein S20
Chain e2
uS14
Chain q3
Transfer RNA; tRNA
Chain v3
mRNA

Coloring options:

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