J3_7NWH_028

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

7NWH|1|9|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWH_028 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1987

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NWH|1|9|U|1350
7NWH|1|9|G|1351
*
7NWH|1|9|U|1360
7NWH|1|9|G|1361
7NWH|1|9|U|1362
7NWH|1|9|C|1363
*
7NWH|1|9|G|1375
7NWH|1|9|A|1376
7NWH|1|9|U|1377
7NWH|1|9|A|1378
7NWH|1|9|A|1379

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain CC

40S ribosomal protein S2

Chain RR

40S ribosomal protein S17