J3_7NWH_035
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 7NWH|1|5|C|2470, 7NWH|1|5|A|2472, 7NWH|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWH_035 not in the Motif Atlas
- Homologous match to J3_8GLP_031
- Geometric discrepancy: 0.4787
- The information below is about J3_8GLP_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_53783.2
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Number of instances in this motif group
- 3
Unit IDs
7NWH|1|5|A|2451
7NWH|1|5|G|2452
7NWH|1|5|A|2453
7NWH|1|5|U|2454
7NWH|1|5|G|2455
7NWH|1|5|G|2456
*
7NWH|1|5|C|2465
7NWH|1|5|G|2466
7NWH|1|5|U|2467
7NWH|1|5|U|2468
7NWH|1|5|C|2469
7NWH|1|5|C|2470
7NWH|1|5|G|2471
7NWH|1|5|A|2472
7NWH|1|5|A|2473
7NWH|1|5|G|2474
7NWH|1|5|G|2475
7NWH|1|5|G|2476
*
7NWH|1|5|C|2501
7NWH|1|5|A|2502
7NWH|1|5|G|2503
7NWH|1|5|C|2504
7NWH|1|5|C|2505
7NWH|1|5|G|2506
7NWH|1|5|A|2507
7NWH|1|5|U|2508
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L8
- Chain G
- L7a
- Chain N
- Ribosomal protein L15
- Chain X
- uL23
- Chain j
- Ribosomal protein L37
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