J3_7NWI_006
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 7NWI|1|5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_006 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.2178
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NWI|1|5|G|1545
7NWI|1|5|C|1546
7NWI|1|5|A|1547
7NWI|1|5|G|1548
*
7NWI|1|5|C|1580
7NWI|1|5|G|1581
7NWI|1|5|U|1582
7NWI|1|5|A|1583
7NWI|1|5|G|1584
*
7NWI|1|5|U|1609
7NWI|1|5|C|1610
7NWI|1|5|C|1611
7NWI|1|5|G|1612
7NWI|1|5|A|1613
7NWI|1|5|C|1614
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain A
- L8
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- ribosomal protein eL43
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