J3_7NWI_022

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7NWI|1|9|C|1138, 7NWI|1|9|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|C|1094
7NWI|1|9|C|1095
7NWI|1|9|G|1096
*
7NWI|1|9|U|1136
7NWI|1|9|U|1137
7NWI|1|9|C|1138
7NWI|1|9|C|1139
7NWI|1|9|G|1140
*
7NWI|1|9|C|1147
7NWI|1|9|A|1148
7NWI|1|9|A|1149
7NWI|1|9|A|1150
7NWI|1|9|G|1151

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain VV

S21

Chain WW

Ribosomal protein S15a

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27