J3_7NWI_023

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|9|C|1218
7NWI|1|9|C|1219
7NWI|1|9|A|1220
7NWI|1|9|G|1221
*
7NWI|1|9|C|1645
7NWI|1|9|C|1646
7NWI|1|9|A|1647
7NWI|1|9|G|1648
7NWI|1|9|U|1649
7NWI|1|9|A|1650
7NWI|1|9|A|1651
*
7NWI|1|9|U|1673
7NWI|1|9|G|1674
7NWI|1|9|A|1675
7NWI|1|9|U|1676
7NWI|1|9|U|1677
7NWI|1|9|A|1678
7NWI|1|9|A|1679
7NWI|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain QQ

Rps16 protein

Chain cc

40S ribosomal protein S28