J3_7NWI_035
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 7NWI|1|5|C|2470, 7NWI|1|5|A|2472, 7NWI|1|5|G|2475, 7NWI|1|5|G|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_035 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5819
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NWI|1|5|A|2451
7NWI|1|5|G|2452
7NWI|1|5|A|2453
7NWI|1|5|U|2454
7NWI|1|5|G|2455
7NWI|1|5|G|2456
*
7NWI|1|5|C|2465
7NWI|1|5|G|2466
7NWI|1|5|U|2467
7NWI|1|5|U|2468
7NWI|1|5|C|2469
7NWI|1|5|C|2470
7NWI|1|5|G|2471
7NWI|1|5|A|2472
7NWI|1|5|A|2473
7NWI|1|5|G|2474
7NWI|1|5|G|2475
7NWI|1|5|G|2476
*
7NWI|1|5|C|2501
7NWI|1|5|G|2502
7NWI|1|5|G|2503
7NWI|1|5|C|2504
7NWI|1|5|C|2505
7NWI|1|5|G|2506
7NWI|1|5|A|2507
7NWI|1|5|U|2508
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- uL23
- Chain j
- Ribosomal protein L37
Coloring options: