J3_7NWI_040

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7NWI|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWI_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1327

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWI|1|9|A|40
7NWI|1|9|G|41
7NWI|1|9|A|42
7NWI|1|9|U|43
7NWI|1|9|U|44
7NWI|1|9|A|45
7NWI|1|9|A|46
7NWI|1|9|G|47
*
7NWI|1|9|C|479
7NWI|1|9|G|480
7NWI|1|9|C|481
7NWI|1|9|G|482
7NWI|1|9|C|483
7NWI|1|9|A|484
7NWI|1|9|A|485
7NWI|1|9|A|486
7NWI|1|9|U|487
*
7NWI|1|9|A|512
7NWI|1|9|G|513
7NWI|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain XX

Ribosomal protein S23