J3_7NWT_024

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7NWT|1|2|U|1240, 7NWT|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWT_024 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.123

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7NWT|1|2|C|1237
7NWT|1|2|A|1238
7NWT|1|2|A|1239
7NWT|1|2|U|1240
7NWT|1|2|G|1241
*
7NWT|1|2|C|1296
7NWT|1|2|G|1297
7NWT|1|2|U|1298
7NWT|1|2|A|1299
7NWT|1|2|G|1300
7NWT|1|2|U|1301
7NWT|1|2|C|1302
7NWT|1|2|C|1303
*
7NWT|1|2|G|1334
7NWT|1|2|U|1335
7NWT|1|2|C|1336
7NWT|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13