J3_7NWT_036

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWT_036 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.0968

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7NWT|1|2|U|1073
7NWT|1|2|G|1074
*
7NWT|1|2|U|1083
7NWT|1|2|G|1084
7NWT|1|2|U|1085
7NWT|1|2|U|1086
*
7NWT|1|2|G|1099
7NWT|1|2|C|1100
7NWT|1|2|A|1101
7NWT|1|2|A|1102

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain j

30S ribosomal protein S5

Chain z

30S ribosomal protein S21