3D structure

PDB id
7NWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7NWW|1|1|A|504, 7NWW|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NWW_027 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1213
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7NWW|1|1|G|30
7NWW|1|1|C|31
*
7NWW|1|1|G|474
7NWW|1|1|C|475
7NWW|1|1|G|476
7NWW|1|1|A|477
7NWW|1|1|A|478
7NWW|1|1|A|479
7NWW|1|1|A|480
7NWW|1|1|G|481
7NWW|1|1|A|482
7NWW|1|1|A|483
7NWW|1|1|C|484
*
7NWW|1|1|G|496
7NWW|1|1|A|497
7NWW|1|1|G|498
7NWW|1|1|U|499
7NWW|1|1|G|500
7NWW|1|1|A|501
7NWW|1|1|A|502
7NWW|1|1|A|503
7NWW|1|1|A|504
7NWW|1|1|A|505
7NWW|1|1|G|506
7NWW|1|1|A|507
7NWW|1|1|A|508
7NWW|1|1|C|509
7NWW|1|1|C|510

Current chains

Chain 1
23S rRNA

Nearby chains

Chain P
50S ribosomal protein L20
Chain R
50S ribosomal protein L22
Chain T
50S ribosomal protein L24

Coloring options:


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