3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
7O1A|1|AA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O1A_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7O1A|1|AA|U|672
7O1A|1|AA|A|673
*
7O1A|1|AA|U|717
7O1A|1|AA|A|718
7O1A|1|AA|C|719
7O1A|1|AA|C|720
7O1A|1|AA|G|721
7O1A|1|AA|G|722
7O1A|1|AA|U|723
7O1A|1|AA|G|724
7O1A|1|AA|G|725
*
7O1A|1|AA|C|732
7O1A|1|AA|G|733
7O1A|1|AA|G|734

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AF
30S ribosomal protein S6
Chain AK
30S ribosomal protein S11
Chain AO
30S ribosomal protein S15
Chain AR
30S ribosomal protein S18
Chain AU
30S ribosomal protein S21
Chain BC
50S ribosomal protein L2

Coloring options:


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