3D structure

PDB id
7O1C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7O1C|1|AA|A|975, 7O1C|1|AA|G|976, 7O1C|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O1C_006 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0697
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7O1C|1|AA|U|955
7O1C|1|AA|U|956
7O1C|1|AA|U|957
7O1C|1|AA|A|958
7O1C|1|AA|A|959
7O1C|1|AA|U|960
7O1C|1|AA|U|961
7O1C|1|AA|C|962
*
7O1C|1|AA|G|973
7O1C|1|AA|A|974
7O1C|1|AA|A|975
7O1C|1|AA|G|976
7O1C|1|AA|A|977
7O1C|1|AA|A|978
7O1C|1|AA|C|979
7O1C|1|AA|C|980
7O1C|1|AA|U|981
7O1C|1|AA|U|982
7O1C|1|AA|A|983
7O1C|1|AA|C|984
*
7O1C|1|AA|G|1221
7O1C|1|AA|G|1222
7O1C|1|AA|C|1223
7O1C|1|AA|U|1224
7O1C|1|AA|A|1225

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19
Chain B9
Peptide chain release factor RF2

Coloring options:


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