3D structure

PDB id
7O1C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O1C_009 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.0924
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7O1C|1|AA|C|1063
7O1C|1|AA|G|1064
7O1C|1|AA|U|1065
7O1C|1|AA|C|1066
7O1C|1|AA|A|1067
7O1C|1|AA|G|1068
*
7O1C|1|AA|C|1107
7O1C|1|AA|G|1108
7O1C|1|AA|C|1109
7O1C|1|AA|A|1110
7O1C|1|AA|A|1111
7O1C|1|AA|C|1112
7O1C|1|AA|C|1113
*
7O1C|1|AA|G|1187
7O1C|1|AA|A|1188
7O1C|1|AA|U|1189
7O1C|1|AA|G|1190
7O1C|1|AA|A|1191
7O1C|1|AA|C|1192
7O1C|1|AA|G|1193

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AE
30S ribosomal protein S5
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.129 s