J3_7O5B_007
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- 7O5B|1|A|U|1221, 7O5B|1|A|U|1223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_007 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.4084
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7O5B|1|A|C|1000
7O5B|1|A|U|1001
7O5B|1|A|U|1002
7O5B|1|A|G|1003
*
7O5B|1|A|C|1055
7O5B|1|A|A|1056
7O5B|1|A|G|1057
*
7O5B|1|A|C|1219
7O5B|1|A|U|1220
7O5B|1|A|U|1221
7O5B|1|A|A|1222
7O5B|1|A|U|1223
7O5B|1|A|G|1224
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain N
- 30S ribosomal protein S14
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