J3_7O5B_018
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCAG*CGAAC*GAUGAG
- Length
- 15 nucleotides
- Bulged bases
- 7O5B|1|X|A|811
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_018 not in the Motif Atlas
- Geometric match to J3_5TBW_005
- Geometric discrepancy: 0.3095
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7O5B|1|X|C|744
7O5B|1|X|C|745
7O5B|1|X|A|746
7O5B|1|X|G|747
*
7O5B|1|X|C|779
7O5B|1|X|G|780
7O5B|1|X|A|781
7O5B|1|X|A|782
7O5B|1|X|C|783
*
7O5B|1|X|G|807
7O5B|1|X|A|808
7O5B|1|X|U|809
7O5B|1|X|G|810
7O5B|1|X|A|811
7O5B|1|X|G|812
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain Z
- 50S ribosomal protein L2
Coloring options: