J3_7O5B_020

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_020 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1353

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7O5B|1|X|C|1337
7O5B|1|X|G|1338
7O5B|1|X|A|1339
7O5B|1|X|A|1340
7O5B|1|X|U|1341
7O5B|1|X|G|1342
*
7O5B|1|X|C|1670
7O5B|1|X|G|1671
7O5B|1|X|A|1672
*
7O5B|1|X|U|1684
7O5B|1|X|A|1685
7O5B|1|X|A|1686
7O5B|1|X|G|1687

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains