J3_7O5B_021

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7O5B|1|X|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_021 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1269

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7O5B|1|X|C|1344
7O5B|1|X|U|1345
7O5B|1|X|A|1346
7O5B|1|X|A|1347
7O5B|1|X|G|1348
*
7O5B|1|X|C|1650
7O5B|1|X|G|1651
7O5B|1|X|C|1652
7O5B|1|X|A|1653
7O5B|1|X|A|1654
7O5B|1|X|A|1655
7O5B|1|X|C|1656
*
7O5B|1|X|G|1665
7O5B|1|X|U|1666
7O5B|1|X|A|1667
7O5B|1|X|G|1668

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain 2

50S ribosomal protein L34