J3_7O5B_022

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1524

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7O5B|1|X|U|1383
7O5B|1|X|C|1384
7O5B|1|X|G|1385
7O5B|1|X|G|1386
7O5B|1|X|G|1387
7O5B|1|X|A|1388
7O5B|1|X|C|1389
*
7O5B|1|X|G|1420
7O5B|1|X|A|1421
7O5B|1|X|C|1422
7O5B|1|X|A|1423
7O5B|1|X|A|1424
*
7O5B|1|X|U|1441
7O5B|1|X|A|1442

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain s

50S ribosomal protein L23