J3_7O5B_036
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 7O5B|1|X|G|550, 7O5B|1|X|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_036 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2854
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
7O5B|1|X|G|30
7O5B|1|X|C|31
*
7O5B|1|X|G|521
7O5B|1|X|U|522
7O5B|1|X|G|523
7O5B|1|X|A|524
7O5B|1|X|A|525
7O5B|1|X|A|526
7O5B|1|X|A|527
7O5B|1|X|G|528
7O5B|1|X|C|529
7O5B|1|X|A|530
7O5B|1|X|C|531
*
7O5B|1|X|G|542
7O5B|1|X|A|543
7O5B|1|X|G|544
7O5B|1|X|U|545
7O5B|1|X|G|546
7O5B|1|X|A|547
7O5B|1|X|A|548
7O5B|1|X|A|549
7O5B|1|X|G|550
7O5B|1|X|A|551
7O5B|1|X|G|552
7O5B|1|X|A|553
7O5B|1|X|U|554
7O5B|1|X|C|555
7O5B|1|X|C|556
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain g
- Signal recognition particle protein
- Chain n
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L24
Coloring options: