J3_7O5B_037
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7O5B|1|X|U|495, 7O5B|1|X|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O5B_037 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1062
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|X|C|32
7O5B|1|X|U|33
7O5B|1|X|U|34
7O5B|1|X|G|35
*
7O5B|1|X|C|492
7O5B|1|X|G|493
7O5B|1|X|A|494
7O5B|1|X|U|495
7O5B|1|X|A|496
7O5B|1|X|G|497
7O5B|1|X|U|498
7O5B|1|X|G|499
7O5B|1|X|A|500
7O5B|1|X|A|501
7O5B|1|X|C|502
7O5B|1|X|C|503
7O5B|1|X|A|504
7O5B|1|X|G|505
7O5B|1|X|U|506
7O5B|1|X|A|507
7O5B|1|X|C|508
*
7O5B|1|X|G|515
7O5B|1|X|G|516
7O5B|1|X|A|517
7O5B|1|X|A|518
7O5B|1|X|A|519
7O5B|1|X|G|520
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L4
- Chain h
- MifM-stalling construct
- Chain n
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L23
Coloring options: