J3_7O5B_038

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAAG*CGCCAUAGGA*UGUAG

Length

20 nucleotides

Bulged bases

7O5B|1|X|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5B_038 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1135

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7O5B|1|X|U|340
7O5B|1|X|G|341
7O5B|1|X|A|342
7O5B|1|X|A|343
7O5B|1|X|G|344
*
7O5B|1|X|C|360
7O5B|1|X|G|361
7O5B|1|X|C|362
7O5B|1|X|C|363
7O5B|1|X|A|364
7O5B|1|X|U|365
7O5B|1|X|A|366
7O5B|1|X|G|367
7O5B|1|X|G|368
7O5B|1|X|A|369
*
7O5B|1|X|U|381
7O5B|1|X|G|382
7O5B|1|X|U|383
7O5B|1|X|A|384
7O5B|1|X|G|385

Current chains

Chain X

23S rRNA (2887-MER)

Nearby chains

Chain b

50S ribosomal protein L4

Chain t

50S ribosomal protein L24