J3_7O5H_004

3D structure

PDB id

7O5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

7O5H|1|A|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O5H_004 not in the Motif Atlas

Geometric match to J3_5J7L_009

Geometric discrepancy: 0.1221

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7O5H|1|A|U|1073
7O5H|1|A|G|1074
*
7O5H|1|A|U|1083
7O5H|1|A|G|1084
7O5H|1|A|U|1085
7O5H|1|A|U|1086
7O5H|1|A|G|1087
*
7O5H|1|A|C|1098
7O5H|1|A|G|1099
7O5H|1|A|C|1100
7O5H|1|A|A|1101
7O5H|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain E

30S ribosomal protein S5