J3_7O7Y_014

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7O7Y|1|B5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Y|1|B5|C|112
7O7Y|1|B5|A|113
7O7Y|1|B5|G|114
7O7Y|1|B5|C|115
7O7Y|1|B5|G|116
*
7O7Y|1|B5|C|155
7O7Y|1|B5|G|156
7O7Y|1|B5|U|157
7O7Y|1|B5|A|158
7O7Y|1|B5|C|159
7O7Y|1|B5|G|160
*
7O7Y|1|B5|C|275
7O7Y|1|B5|C|276
7O7Y|1|B5|G|277
7O7Y|1|B5|G|278

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BG

Ribosomal protein eL8

Chain BL

Ribosomal protein eL13

Chain BN

Ribosomal protein L15

Chain Bh

uL29

Chain Bi

60S ribosomal protein L36