J3_7O7Y_017

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Y_017 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.2712

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7O7Y|1|B5|C|1501
7O7Y|1|B5|A|1502
7O7Y|1|B5|G|1503
*
7O7Y|1|B5|C|1535
7O7Y|1|B5|G|1536
7O7Y|1|B5|PSU|1537
7O7Y|1|B5|A|1538
7O7Y|1|B5|G|1539
*
7O7Y|1|B5|U|1564
7O7Y|1|B5|C|1565
7O7Y|1|B5|C|1566
7O7Y|1|B5|G|1567

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BR

60S ribosomal protein L19

Chain Bg

60S ribosomal protein L34

Chain Bp

eL43