J3_7O7Y_018
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 7O7Y|1|B5|A|1744, 7O7Y|1|B5|U|1773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O7Y_018 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5297
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O7Y|1|B5|U|1665
7O7Y|1|B5|U|1666
*
7O7Y|1|B5|A|1741
7O7Y|1|B5|G|1742
7O7Y|1|B5|A|1743
7O7Y|1|B5|A|1744
7O7Y|1|B5|G|1745
*
7O7Y|1|B5|C|1771
7O7Y|1|B5|G|1772
7O7Y|1|B5|U|1773
7O7Y|1|B5|G|1774
7O7Y|1|B5|G|1775
7O7Y|1|B5|A|1776
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- Ribosomal Protein uL30
- Chain BT
- eL21
- Chain Bb
- 60S ribosomal protein L29
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