J3_7O7Y_033

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

7O7Y|1|A2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Y_033 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0528

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7O7Y|1|A2|A|40
7O7Y|1|A2|G|41
7O7Y|1|A2|A|42
7O7Y|1|A2|U|43
7O7Y|1|A2|U|44
7O7Y|1|A2|A|45
7O7Y|1|A2|A|46
7O7Y|1|A2|G|47
*
7O7Y|1|A2|C|480
7O7Y|1|A2|G|481
7O7Y|1|A2|C|482
7O7Y|1|A2|G|483
7O7Y|1|A2|C|484
7O7Y|1|A2|A2M|485
7O7Y|1|A2|A|486
7O7Y|1|A2|A|487
7O7Y|1|A2|U|488
*
7O7Y|1|A2|A2M|513
7O7Y|1|A2|G|514
7O7Y|1|A2|U|515

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23