J3_7O7Z_011

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_011 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.0918

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7O7Z|1|A2|U|1351
7O7Z|1|A2|G|1352
*
7O7Z|1|A2|U|1361
7O7Z|1|A2|G|1362
7O7Z|1|A2|U|1363
7O7Z|1|A2|C|1364
*
7O7Z|1|A2|G|1376
7O7Z|1|A2|A|1377
7O7Z|1|A2|U|1378
7O7Z|1|A2|A|1379
7O7Z|1|A2|A|1380

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

40S ribosomal protein SA

Chain Ab

Ribosomal protein uS5

Chain Aq

40S ribosomal protein eS17